First of all, thanks for the feedback guys. I really like seeing some people actually enjoying this, after all this time :)

Also, it's been quite some time since I played this game (basically hadn't touched it again after finishing the extension last year), but because of the sudden interest, I've reinstalled and looked into some of the comments.
So, first, I did some patching. Then I played the game, as a total noob not knowing any of the comments (seriously, I had to google half of the things, like how to 'solve' or what to do after running the programs to open the ports (porthack)). I managed to get quite far, finishing all the side-missions, before I realised I've used up my 1 free evening this week :P
So, before going to bed, here's the patch and some responses to some of the comments. Any more feedback/bug reports are welcome in the feedback/suggestions thread. However, since I've got a very busy schedule these days, I'm not going to promise I'll be able to put a lot more work in this ;) We'll see.

So, the patch:
- I changed some of the IPs someone complained about; my initial intention with the IPs was basically some fun. However, this particular one might've been a rather bad joke, so I decided to go a different route with the IP(s) of this particular node/cluster. On a side note though, I have actually put in quite a few of these little 'easter eggs' when it comes to IPs. And just because I can, I decided to add another one, hidden and disconnected, but if you guess the IP, you might have a giggle ;)
- I also fixed the typo (capital vs smaller case G); I hope :P

And here are some replies to some 'open' comments, in chronological order:
@fixitman.mike: I've just checked the revenge mission. Deleting all files in /sys worked fine on my end... After deleting all, sending an email cleared the mission. This mission is very standard, so it should not 'bug' ;)
@Kepler68 and @niceguy: "You messed up" is actually the worst ending and it's meant to 'break the game', so you can't go back and try to find out more. There was no normal way for me to do it, so that mission actually ends in the player system getting wiped :P You'll have to restart to try and find the other two endings, or at least, the good one. Need a hint? ;)