Disclaimer: Both Types of Nanomachines are used in these tests.

>>I took it to an Outpost Sandbox Mission: Mudraptors couldn't pen the Nanomachines, this is with Neurotrauma Active. Your health does get cut down by a quarter if you use both types of Nanomachines.

>>You cannot take gun fire, without losing a limb or your spleen. (I perished)
Gunshot, bleeding, fractures, etc etc.

I would say its compatible within the logic of Metal Gear PHYSICAL TRAUMA , but ya know Metal Gear Rising is anime the game, no one put a gun to Armstrong's giga-dome. Lol.
(To my knowledge)