This is not really a bug as opposed to an issue with having dye made in the same place as kibble, I have noticed this in all crafters that does this. When making any kibble that requires berries, the dye will craft faster than the kibble and therefore uses up the berries before the kibble can finish being crafted. The only way around this that I have found is to have LOTS of berries. I usually end up with hundreds of useless dyes just to make one or two kibbles. Can you make it so that dye requires queuing like other items or is this a game level thing?

It's on the to do list, in the mean time I just use Angler Gel to fuel it.