When i got in the mod i could not craft anything from mortar pestle, and could not craft any type of bullets in fabricator or smithy

After you have installed the mod, you have to re-learn all engrams. Make sure you pick them up and replace them aswell.

I seem to be getting 2 versions of some resources. Some Stackable, some not. Example: Giant Bee Honey. On Extinction the Element Dust I spawn in with admin command can't be used to craft unstable element. Though, that may not have to do with this mod. :)

i think the element in this mod is making the space dolphins untameable as they seem to not care that i have element in my 0 slot and i dont have any other mods effecting element. ill let you know if investigation proves something different

Seems I can't craft Pheromone Darts. I learned the engram, but they show as unlearned in the fabricator and replicator.