Not that I know of. Having them downloaded is not a problem though, just disable all but one, then re-enable one at a time until you find which ones are causing issues. Then write a comment on the mods page so the author gets a chance to fix it :)

Some advice if you've downloaded the Nephilim skill (The Blood of Angels mod), don't use the skill called Chill of the Soul Wind too much. It is so overpowered against monster zoos (use it at your own discretion or to keep it simple if you find a zoo too difficult) and it occasionally crashes you because of 2 reasons that connect to each other
1. The radius is so darn big.
2. I don't know what causes to crash the game by using this skill, but it could be other mods that add new things to the dungeon, and because of the size of the radius, the new things from mods could also get caught in the radius.

I've had a few problems with some mods that duplicate things. There are saveral crafting skills that duplicate each other. Also for some reason when I tried to use the skill set "Dragon Aspirnat" if would get merged with Combine4d crafting and they would end up on the same skill slot.

@UndergroundGemz Do you have all of the DLC? and if so then yea I recommend doing the slow but surefire way of individually loading each mod to figure out what the problem is, and if that doesn't work, you may have too many mods loaded into memory or some are conflicting.