To help you 100% the game Faster:
-1) Click on skipping the intro


-2) You can continue to click skip until you get to this point. SAVE here


You need to load to pick the other choice:
If You click Humanity must Perish........Apocalypse achievement

If you click humanity has hope........you get hope achievement.

The rest of achievements are not choice related and you can get by clicking skip.

This made me LOL

Someone mentioned in the comments and thanks!
delete folders "C:\Users\*username*\AppData\Roaming\RenPy\HumanityMustPerish-1486410470" and "X:\Steam\SteamApps\common\Humanity Must Perish\game\save